{
  "_id": "6a1026d5acfb0bcc41c8fb61",
  "Package": "ctmmUtils",
  "Type": "Package",
  "Title": "Auxillary functions for using the {ctmm} package efficiently",
  "Version": "0.0.0.9110",
  "Date": "July, 17 2025",
  "Authors@R": "c(\nperson(\"Devin S.\", \"Johnson\", email = \"devin.johnson@noaa.gov\",role = c(\"aut\", \"cre\")),\nperson(\"Josh\", \"London\", email = \"josh.london@noaa.gov\", role = c(\"aut\"))\n)",
  "Maintainer": "Devin S. Johnson <devin.johnson@noaa.gov>",
  "Description": "Utility functions to augment the the {ctmm} package. The\nadditional function are targeted toward analysis of marine\nmammal telemetry, but can be used or easily modified for other\nsituations.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Remotes": [
    "jmlondon/pathroutr"
  ],
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibgmp3-dev make libgsl0-dev libicu-dev libuv1-dev libmpfr-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev\nlibx11-dev",
  "Repository": "https://dsjohnson.r-universe.dev",
  "Date/Publication": "2025-07-17 21:51:04 UTC",
  "RemoteUrl": "https://github.com/dsjohnson/ctmmUtils",
  "RemoteRef": "HEAD",
  "RemoteSha": "d33914266f592568517d17924b3fbf6d4b6b3e10",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 08:57:45 UTC",
    "User": "root"
  },
  "Author": "Devin S. Johnson [aut, cre],\nJosh London [aut]",
  "MD5sum": "4fe2b7c01226e6bb709f67d46b5670c0",
  "_user": "dsjohnson",
  "_type": "src",
  "_file": "ctmmUtils_0.0.0.9110.tar.gz",
  "_fileid": "d9a7d8d3f570569c9fc8dedde45029c59bebca4f7066951415aa10b5cb340338",
  "_filesize": 162001,
  "_sha256": "d9a7d8d3f570569c9fc8dedde45029c59bebca4f7066951415aa10b5cb340338",
  "_created": "2026-05-13T08:57:45.000Z",
  "_published": "2026-05-22T09:50:13.641Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77355834385,
      "time": 313,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6965865844"
    },
    {
      "job": 77355834466,
      "time": 301,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6965859531"
    },
    {
      "job": 77355834516,
      "time": 227,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6965832469"
    },
    {
      "job": 77355834063,
      "time": 298,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6965858786"
    },
    {
      "job": 77355833543,
      "time": 263,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6965755988"
    },
    {
      "job": 77355833641,
      "time": 189,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157661570"
    },
    {
      "job": 77355833960,
      "time": 295,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6965857246"
    },
    {
      "job": 77355834121,
      "time": 315,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6965864678"
    },
    {
      "job": 77355834430,
      "time": 294,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6965857445"
    }
  ],
  "_buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/dsjohnson/ctmmUtils",
  "_commit": {
    "id": "d33914266f592568517d17924b3fbf6d4b6b3e10",
    "author": "Devin Johnson <devin.johnson@noaa.gov>",
    "committer": "Devin Johnson <devin.johnson@noaa.gov>",
    "message": "removed st_expand\n\nleft a version in picMaps\n",
    "time": 1752789064
  },
  "_maintainer": {
    "name": "Devin S. Johnson",
    "email": "devin.johnson@noaa.gov",
    "login": "dsjohnson",
    "uuid": 513489
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "ctmm",
      "role": "Imports"
    },
    {
      "package": "janitor",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "terra",
      "role": "Imports"
    },
    {
      "package": "mgcv",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "units",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "plotly",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "fuzzyjoin",
      "role": "Imports"
    },
    {
      "package": "progressr",
      "role": "Imports"
    },
    {
      "package": "doFuture",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "pathroutr",
      "role": "Suggests"
    }
  ],
  "_owner": "dsjohnson",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 1
    },
    {
      "week": "2025-29",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "dsjohnson",
      "count": 15,
      "uuid": 513489
    }
  ],
  "_userbio": {
    "uuid": 513489,
    "type": "user",
    "name": "Devin Johnson",
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ctmmUtils"
  },
  "_devurl": "https://github.com/dsjohnson/ctmmutils",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ctmmUtils.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "akde_barrier",
    "as_telem",
    "ctmm_select_parallel",
    "hex_size",
    "migration_det",
    "ouf_corfun",
    "ouf_covmat",
    "ouf_ess",
    "ouf_ess_parallel",
    "plot_disp",
    "read_wc_dirs",
    "set_default_ellipses",
    "st_bbox_list",
    "st_not_within",
    "st_to_360",
    "st_union_list",
    "ud_area_table"
  ],
  "_help": [
    {
      "page": "ctmmUtils-package",
      "title": "Functions To Increase Usability Of The 'ctmm' Package",
      "topics": [
        "ctmmUtils-package",
        "ctmmUtils"
      ]
    },
    {
      "page": "akde_barrier",
      "title": "Safe method for calculating an AKDE with a barrier",
      "topics": [
        "akde_barrier"
      ]
    },
    {
      "page": "as_telem",
      "title": "Convert Wildlife Computers data imported with `read_wc_dirs` to a `telemetry` object from the `ctmm` package.",
      "topics": [
        "as_telem"
      ]
    },
    {
      "page": "ctmm_select_parallel",
      "title": "Parallel fitting of ctmm OUF family models",
      "topics": [
        "ctmm_select_parallel"
      ]
    },
    {
      "page": "hex_size",
      "title": "Calculate cellsize value for hexagon grid",
      "topics": [
        "hex_size"
      ]
    },
    {
      "page": "migration_det",
      "title": "Migration detection",
      "topics": [
        "migration_det"
      ]
    },
    {
      "page": "ouf_corfun",
      "title": "Create covariance function for a fitted OU or OUF ctmm model object",
      "topics": [
        "ouf_corfun"
      ]
    },
    {
      "page": "ouf_covmat",
      "title": "Calculate correlation matrix for a set of times from a `ctmm` covariance function",
      "topics": [
        "ouf_covmat"
      ]
    },
    {
      "page": "ouf_ess",
      "title": "Calculate Effective Sample Size for a Set of OUF locations",
      "topics": [
        "ouf_ess"
      ]
    },
    {
      "page": "ouf_ess_parallel",
      "title": "Parallel ESS calculation of ctmm OUF family models",
      "topics": [
        "ouf_ess_parallel"
      ]
    },
    {
      "page": "plot_disp",
      "title": "Plot migration detection results",
      "topics": [
        "plot_disp"
      ]
    },
    {
      "page": "read_wc_dirs",
      "title": "Read individual telemetry data from Wildlife Computers portal directories",
      "topics": [
        "read_wc_dirs"
      ]
    },
    {
      "page": "set_default_ellipses",
      "title": "Set Default Values for MIssing ARGOS Diagnostic Data",
      "topics": [
        "set_default_ellipses"
      ]
    },
    {
      "page": "st_bbox_list",
      "title": "'sf::st_bbox' for a list of 'sf' or 'sfc' objects.",
      "topics": [
        "st_bbox_list"
      ]
    },
    {
      "page": "st_not_within",
      "title": "Predicate function for st_filter",
      "topics": [
        "st_not_within"
      ]
    },
    {
      "page": "st_to_360",
      "title": "Convert longitude/latitude coordinates from -180/180 to 0/360",
      "topics": [
        "st_to_360"
      ]
    },
    {
      "page": "st_union_list",
      "title": "'sf::st_union' for a list of 'sf' or 'sfc' objects.",
      "topics": [
        "st_union_list"
      ]
    },
    {
      "page": "ud_area_table",
      "title": "Get UD Area Table",
      "topics": [
        "ud_area_table"
      ]
    }
  ],
  "_readme": "https://github.com/dsjohnson/ctmmUtils/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "Bessel",
    "bit",
    "bit64",
    "bslib",
    "cachem",
    "class",
    "classInt",
    "cli",
    "clipr",
    "codetools",
    "cpp11",
    "crayon",
    "crosstalk",
    "ctmm",
    "curl",
    "data.table",
    "DBI",
    "DEoptimR",
    "digest",
    "doFuture",
    "dplyr",
    "e1071",
    "evaluate",
    "expm",
    "farver",
    "fastmap",
    "fasttime",
    "fontawesome",
    "foreach",
    "fs",
    "future",
    "future.apply",
    "fuzzyjoin",
    "generics",
    "geosphere",
    "ggplot2",
    "globals",
    "glue",
    "Gmedian",
    "gmp",
    "gsl",
    "gtable",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httr",
    "isoband",
    "iterators",
    "janitor",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "manipulate",
    "MASS",
    "Matrix",
    "memoise",
    "mgcv",
    "mime",
    "nlme",
    "numDeriv",
    "openssl",
    "otel",
    "parallelly",
    "parsedate",
    "pbivnorm",
    "pillar",
    "pkgconfig",
    "plotly",
    "pracma",
    "prettyunits",
    "progress",
    "progressr",
    "promises",
    "proxy",
    "purrr",
    "R6",
    "rappdirs",
    "raster",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "readr",
    "rlang",
    "rmarkdown",
    "Rmpfr",
    "robustbase",
    "RSpectra",
    "s2",
    "S7",
    "sass",
    "scales",
    "sf",
    "shape",
    "snakecase",
    "sp",
    "statmod",
    "stringdist",
    "stringi",
    "stringr",
    "sys",
    "terra",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "tzdb",
    "units",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "wk",
    "xfun",
    "yaml"
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "ctmmutils",
  "_universes": [
    "dsjohnson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:01:19.000Z",
      "distro": "noble",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "528d62db6c11328e0d69f178416b5fd5481e624f66c215c50dc3e320622ffef0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:01:05.000Z",
      "distro": "noble",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "5a80de408db033013e461527d634ef17919713b8ba460a00eef631f25fd181a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:00:16.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "01154dd508c60ca80b0eac135ed45f0a4020988edea5104e12948a4857319ab0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:00:52.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "830b37943729b5ce9a620606aeff4e3fda30c23fed87bad7326088c8eb339524",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:00:27.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "4dc400f7f727fbd3f88b7ffff8e386d57013903ab6b949b87a9965ef44040ad3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:00:54.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "3d84363b48cd8581d5bca1f0c45aa4d699eda04c6db8a8a8dbcb67fe090858eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.0.9110",
      "date": "2026-05-13T09:00:47.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "7289f354cf6ac29dbec0e2053994eba90b431af74f36b001852e63a7e7f9d485",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9110",
      "date": "2026-05-22T09:49:50.000Z",
      "commit": "d33914266f592568517d17924b3fbf6d4b6b3e10",
      "fileid": "397e4ded382b3f11784fc36436d74d0be282daa4d032689935159a6af625e778",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25788805460"
    }
  ]
}