{
  "_id": "6a490651b5e98c4082a06aca",
  "Package": "multAbund",
  "Type": "Package",
  "Title": "Model Multivariate Abundance and Occurence Using the Dirichlet\nProcess Prior",
  "Version": "0.03.9002",
  "Date": "2018-3-28",
  "Author": "Devin S. Johnson",
  "Maintainer": "Devin S. Johnson <devin.johnson@noaa.gov>",
  "Description": "This package provides RJMCMC samplers to make Bayesian\ninference for Joint Species Distribution models (JSDM) using a\nDirichlet Process clustering method. The DP clustering method\nallows species to be grouped into functional guilds for\nmodeling between species associations in abundance or occurence\nvalues at surveyed sites.",
  "License": "CC0",
  "ByteCompile": "TRUE",
  "NeedsCompilation": "yes",
  "RoxygenNote": "7.1.2",
  "Config/pak/sysreqs": "libgsl0-dev",
  "Repository": "https://dsjohnson.r-universe.dev",
  "Date/Publication": "2022-03-15 02:19:03 UTC",
  "RemoteUrl": "https://github.com/dsjohnson/multAbund",
  "RemoteRef": "HEAD",
  "RemoteSha": "91880bfd4473139054b623dd42444b91f01c472f",
  "Packaged": {
    "Date": "2026-07-04 13:04:04 UTC",
    "User": "root"
  },
  "_user": "dsjohnson",
  "_type": "src",
  "_file": "multAbund_0.03.9002.tar.gz",
  "_fileid": "https://r2.ropensci.org/816057efdee40eca8d5930849bd5f4779fc69ba7e9f46bb2ad39220b66070f7e",
  "_filesize": 1347060,
  "_sha256": "816057efdee40eca8d5930849bd5f4779fc69ba7e9f46bb2ad39220b66070f7e",
  "_expires": "2026-10-12T13:10:39.000Z",
  "_created": "2026-07-04T13:04:04.000Z",
  "_published": "2026-07-04T13:10:41.039Z",
  "_jobs": [
    {
      "job": 85134588369,
      "time": 191,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8081979517"
    },
    {
      "job": 85134588347,
      "time": 229,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8081983291"
    },
    {
      "job": 85134588410,
      "time": 195,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8081979951"
    },
    {
      "job": 85134588381,
      "time": 228,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8081983326"
    },
    {
      "job": 85134588358,
      "time": 109,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8081969805"
    },
    {
      "job": 85134588331,
      "time": 298,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8081990995"
    },
    {
      "job": 85134588354,
      "time": 155,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8081975232"
    },
    {
      "job": 85134588341,
      "time": 262,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8081986849"
    },
    {
      "job": 85134310370,
      "time": 256,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8081956908"
    },
    {
      "job": 85134588323,
      "time": 207,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8081980996"
    },
    {
      "job": 85134588352,
      "time": 208,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8081981004"
    },
    {
      "job": 85134588375,
      "time": 193,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8081979314"
    },
    {
      "job": 85134588342,
      "time": 200,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8081980286"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197",
  "_status": "success",
  "_upstream": "https://github.com/dsjohnson/multAbund",
  "_commit": {
    "id": "91880bfd4473139054b623dd42444b91f01c472f",
    "author": "Devin <devin.johnson@noaa.gov>",
    "committer": "Devin <devin.johnson@noaa.gov>",
    "message": "increase version number\n",
    "time": 1647310743
  },
  "_maintainer": {
    "name": "Devin S. Johnson",
    "email": "devin.johnson@noaa.gov",
    "login": "dsjohnson",
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA",
    "uuid": 513489
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "RcppProgress",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "copula",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "magrittr",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "ggdendro",
      "role": "Suggests"
    }
  ],
  "_owner": "dsjohnson",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "dsjohnson",
      "count": 45,
      "uuid": 513489
    }
  ],
  "_userbio": {
    "uuid": 513489,
    "type": "user",
    "name": "Devin Johnson",
    "followers": 67,
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/multAbund"
  },
  "_devurl": "https://github.com/dsjohnson/multabund",
  "_searchresults": 5,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/multAbund.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "get_opt_alpha_prior",
    "make_data_list",
    "mult_abund_norm",
    "mult_abund_pois",
    "mult_abund_probit",
    "mult_abund_zip",
    "view_example"
  ],
  "_help": [
    {
      "page": "multAbund-package",
      "title": "Use Dirichlet Process Prior to Model Multivariate Animal Abundance and Occurance",
      "topics": [
        "multAbund-package",
        "multAbund"
      ]
    },
    {
      "page": "get_opt_alpha_prior",
      "title": "Obtain parameters for gamma prior such that the distribution of the number of groups is equal to the 'target' argument",
      "topics": [
        "get_opt_alpha_prior"
      ]
    },
    {
      "page": "make_data_list",
      "title": "Make necessary data matrices for multivariate abundance and occurence RJMCMC functions",
      "topics": [
        "make_data_list"
      ]
    },
    {
      "page": "mult_abund_norm",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Gaussian observations",
      "topics": [
        "mult_abund_norm"
      ]
    },
    {
      "page": "mult_abund_pois",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Poisson observations",
      "topics": [
        "mult_abund_pois"
      ]
    },
    {
      "page": "mult_abund_probit",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster occurence model with Bernoulli observations",
      "topics": [
        "mult_abund_probit"
      ]
    },
    {
      "page": "mult_abund_zip",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Zero-Inflated Poisson observations",
      "topics": [
        "mult_abund_zip"
      ]
    },
    {
      "page": "view_example",
      "title": "View simulation example",
      "topics": [
        "view_example"
      ]
    }
  ],
  "_readme": "https://github.com/dsjohnson/multAbund/raw/HEAD/README.md",
  "_rundeps": [
    "ADGofTest",
    "cluster",
    "colorspace",
    "copula",
    "gsl",
    "lattice",
    "Matrix",
    "mvtnorm",
    "numDeriv",
    "pcaPP",
    "pspline",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "stabledist"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "multabund",
  "_universes": [
    "dsjohnson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-07-04T13:07:23.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/7ac6292209bf385a3f7dc032379510be76b0653c4be0c8eaa42e028359533dcb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-07-04T13:07:48.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/74047edb0b58392c586e61cb5f5c3e80ca50d9a6709a091fdf5644e98633e6f7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-07-04T13:07:26.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/189938d67269e47223521309ececa6fab96b4f85fea70a5a0d172562878eb726",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-07-04T13:07:42.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/ec40d5cc486d5c2e7c838521d7e9257f7ed6df465e655edec131eea0aa964435",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-07-04T13:06:26.000Z",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/f4f68f2e94abb56f7d7fee1eaaea782456b9f8e69a5dc2a471959a616d59ca1e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-07-04T13:08:13.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/b0bc9fbcc3b9c2cf092b6be123971bb36713642e5ceaaff588077861bacb6eae",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-07-04T13:06:53.000Z",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/7c29ae8255e10cd9580a01da81995a45edf1bea1ecd54ff1892a4a095200eac3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-07-04T13:07:44.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/9a6d8bf86383e15d87c9ff06eeb44f5742081e7a2aeda0d49083dd6c2f64dd94",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.03.9002",
      "date": "2026-07-04T13:08:00.000Z",
      "arch": "emscripten",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/14a9cbf9ccac74268ff24ea62257e6c096967857fe839eb85a46a37757e6f131",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-07-04T13:06:21.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/18c2628910544b24d4bfccf2850c07e542142cf87f2a4be7e9744c4f70326885",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-07-04T13:06:23.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/6d75e4116a099644237a52299e55e38847bb6826e6f6613497c95fa1b33050b3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-07-04T13:06:14.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "https://r2.ropensci.org/aec2bbd40b100fa0b06b648ee71041f16e0129a908adb75a65e23e1e6dbbe967",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28707023197"
    }
  ]
}