{
  "_id": "6a1d5d3c1d7bb097a0a48b58",
  "Package": "multAbund",
  "Type": "Package",
  "Title": "Model Multivariate Abundance and Occurence Using the Dirichlet\nProcess Prior",
  "Version": "0.03.9002",
  "Date": "2018-3-28",
  "Author": "Devin S. Johnson",
  "Maintainer": "Devin S. Johnson <devin.johnson@noaa.gov>",
  "Description": "This package provides RJMCMC samplers to make Bayesian\ninference for Joint Species Distribution models (JSDM) using a\nDirichlet Process clustering method. The DP clustering method\nallows species to be grouped into functional guilds for\nmodeling between species associations in abundance or occurence\nvalues at surveyed sites.",
  "License": "CC0",
  "ByteCompile": "TRUE",
  "NeedsCompilation": "yes",
  "RoxygenNote": "7.1.2",
  "Config/pak/sysreqs": "libgsl0-dev",
  "Repository": "https://dsjohnson.r-universe.dev",
  "Date/Publication": "2022-03-15 02:19:03 UTC",
  "RemoteUrl": "https://github.com/dsjohnson/multAbund",
  "RemoteRef": "HEAD",
  "RemoteSha": "91880bfd4473139054b623dd42444b91f01c472f",
  "Packaged": {
    "Date": "2026-06-01 10:12:42 UTC",
    "User": "root"
  },
  "MD5sum": "adcee0959bdee4f2c4aabf4e267ec389",
  "_user": "dsjohnson",
  "_type": "src",
  "_file": "multAbund_0.03.9002.tar.gz",
  "_fileid": "29591ac2bca99bd676e79bc013c37d4d904eaf2cf7f44982763708bf4e5287ac",
  "_filesize": 1346381,
  "_sha256": "29591ac2bca99bd676e79bc013c37d4d904eaf2cf7f44982763708bf4e5287ac",
  "_created": "2026-06-01T10:12:42.000Z",
  "_published": "2026-06-01T10:21:48.793Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78831040550,
      "time": 207,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7328920164"
    },
    {
      "job": 78831040441,
      "time": 202,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7328918402"
    },
    {
      "job": 78831040408,
      "time": 184,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7328912550"
    },
    {
      "job": 78831040409,
      "time": 276,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7328942551"
    },
    {
      "job": 78831040401,
      "time": 127,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7328894992"
    },
    {
      "job": 78831040382,
      "time": 446,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7328996212"
    },
    {
      "job": 78830378915,
      "time": 258,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7328851963"
    },
    {
      "job": 78831040297,
      "time": 140,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7328899006"
    },
    {
      "job": 78831040416,
      "time": 211,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7328921160"
    },
    {
      "job": 78831040438,
      "time": 188,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7328913993"
    },
    {
      "job": 78831040352,
      "time": 228,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7328926573"
    }
  ],
  "_buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/dsjohnson/multAbund",
  "_commit": {
    "id": "91880bfd4473139054b623dd42444b91f01c472f",
    "author": "Devin <devin.johnson@noaa.gov>",
    "committer": "Devin <devin.johnson@noaa.gov>",
    "message": "increase version number\n",
    "time": 1647310743
  },
  "_maintainer": {
    "name": "Devin S. Johnson",
    "email": "devin.johnson@noaa.gov",
    "login": "dsjohnson",
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA",
    "uuid": 513489
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "RcppProgress",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "copula",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "magrittr",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "ggdendro",
      "role": "Suggests"
    }
  ],
  "_owner": "dsjohnson",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "dsjohnson",
      "count": 45,
      "uuid": 513489
    }
  ],
  "_userbio": {
    "uuid": 513489,
    "type": "user",
    "name": "Devin Johnson",
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/multAbund"
  },
  "_devurl": "https://github.com/dsjohnson/multabund",
  "_searchresults": 4,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/multAbund.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "get_opt_alpha_prior",
    "make_data_list",
    "mult_abund_norm",
    "mult_abund_pois",
    "mult_abund_probit",
    "mult_abund_zip",
    "view_example"
  ],
  "_help": [
    {
      "page": "multAbund-package",
      "title": "Use Dirichlet Process Prior to Model Multivariate Animal Abundance and Occurance",
      "topics": [
        "multAbund-package",
        "multAbund"
      ]
    },
    {
      "page": "get_opt_alpha_prior",
      "title": "Obtain parameters for gamma prior such that the distribution of the number of groups is equal to the 'target' argument",
      "topics": [
        "get_opt_alpha_prior"
      ]
    },
    {
      "page": "make_data_list",
      "title": "Make necessary data matrices for multivariate abundance and occurence RJMCMC functions",
      "topics": [
        "make_data_list"
      ]
    },
    {
      "page": "mult_abund_norm",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Gaussian observations",
      "topics": [
        "mult_abund_norm"
      ]
    },
    {
      "page": "mult_abund_pois",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Poisson observations",
      "topics": [
        "mult_abund_pois"
      ]
    },
    {
      "page": "mult_abund_probit",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster occurence model with Bernoulli observations",
      "topics": [
        "mult_abund_probit"
      ]
    },
    {
      "page": "mult_abund_zip",
      "title": "Perform RJMCMC for posterior sampling of multivariate cluster abundance model with Zero-Inflated Poisson observations",
      "topics": [
        "mult_abund_zip"
      ]
    },
    {
      "page": "view_example",
      "title": "View simulation example",
      "topics": [
        "view_example"
      ]
    }
  ],
  "_readme": "https://github.com/dsjohnson/multAbund/raw/HEAD/README.md",
  "_rundeps": [
    "ADGofTest",
    "cluster",
    "colorspace",
    "copula",
    "gsl",
    "lattice",
    "Matrix",
    "mvtnorm",
    "numDeriv",
    "pcaPP",
    "pspline",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "stabledist"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "multabund",
  "_universes": [
    "dsjohnson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-05-02T08:11:11.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "8a3eb02637a13a9be236f41c4b5ad330a1c7e3251ac69b409d5a9ec071a60318",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25247485829"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-05-02T08:11:04.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "93158e1da7d0deb89f96243ea2fabac15d66c0fdc6927222417d0cb18deae62c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/25247485829"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:58.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "c6b78faa4c6eb2a615afc594132daa7770f252ea77c1da8d47c9bad5b71e3a4c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:56.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "8ff3825a98caa6ab3abaa0f753022f8e55ae3a4d9bbe3d037218711410714a41",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:46.000Z",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "7e8c11079971e63ffe98ce9a45b23afb784af0e31377c8c869e6174d1e6e66b3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-06-01T10:16:41.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "b7886420c5843cb61004a5c2daff7fd287192a46051067548c5b8ac9f5238f4c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:23.000Z",
      "arch": "aarch64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "488790cfb929e9116c21d6a3b1bd91516c361d6e698873c616ae83c68ec645ab",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.03.9002",
      "date": "2026-06-01T10:18:16.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "0835ca1ec1752e0def1b805a5b6840051f3c70fe1435b265525b30079fbddfd7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:44.000Z",
      "arch": "emscripten",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "f69a26aa294b326b4c7e0fbb29c1e25f17482f43593c9e25443465d27239c064",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:14.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "1eb1bb0c6ba3f821434f2aaee11031fb4088a7fb307de54276c59daaf77dcef7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-06-01T10:14:58.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "8073ac522fb5797d90a61a7962e3d72a16f4e75e446f3556c8e18e4748ede42b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.03.9002",
      "date": "2026-06-01T10:15:06.000Z",
      "arch": "x86_64",
      "commit": "91880bfd4473139054b623dd42444b91f01c472f",
      "fileid": "8660788aa47220b601d9d18405f6daa6b9004aea6ccd6db6894a00180db7745b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/26748558705"
    }
  ]
}