{
  "_id": "6a46cdc4c8416c4719cd5cac",
  "Package": "walk",
  "Title": "Model Animal Movement With Continuous-Time Markov Chains",
  "Version": "0.0.0.941",
  "Date": "July 2, 2026",
  "Authors@R": "c(\nperson(\"Devin S.\", \"Johnson\", email=\"devin.johnson@noaa.gov\", role = c(\"aut\", \"cre\"))\n)",
  "Description": "Model animal movement using continuous-time Markov chain\nmodels.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Remotes": [
    "dsjohnson/expQ2"
  ],
  "NeedsCompilation": "yes",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibgmp3-dev libgsl0-dev libicu-dev libmpfr-dev libssl-dev\nlibproj-dev libsqlite3-dev libudunits2-dev",
  "Repository": "https://dsjohnson.r-universe.dev",
  "Date/Publication": "2026-07-02 19:50:47 UTC",
  "RemoteUrl": "https://github.com/dsjohnson/walk",
  "RemoteRef": "HEAD",
  "RemoteSha": "393997abb41a927e786c554da328f5157c8ae745",
  "Packaged": {
    "Date": "2026-07-02 20:36:31 UTC",
    "User": "root"
  },
  "Author": "Devin S. Johnson [aut, cre]",
  "Maintainer": "Devin S. Johnson <devin.johnson@noaa.gov>",
  "_user": "dsjohnson",
  "_type": "src",
  "_file": "walk_0.0.0.941.tar.gz",
  "_fileid": "https://r2.ropensci.org/a6fe02a373ee5c180c946368df98321122ead7cad3f2606d2cf62eeaa44c5008",
  "_filesize": 142365,
  "_sha256": "a6fe02a373ee5c180c946368df98321122ead7cad3f2606d2cf62eeaa44c5008",
  "_expires": "2026-10-10T20:44:52.000Z",
  "_created": "2026-07-02T20:36:31.000Z",
  "_published": "2026-07-02T20:44:52.843Z",
  "_jobs": [
    {
      "job": 84873107810,
      "time": 330,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8051114910"
    },
    {
      "job": 84873107812,
      "time": 364,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8051126342"
    },
    {
      "job": 84873107912,
      "time": 323,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8051112312"
    },
    {
      "job": 84873107886,
      "time": 339,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8051117359"
    },
    {
      "job": 84873108058,
      "time": 157,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8051048304"
    },
    {
      "job": 84873107834,
      "time": 348,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8051120527"
    },
    {
      "job": 84873107809,
      "time": 224,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8051073138"
    },
    {
      "job": 84873107849,
      "time": 333,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8051115377"
    },
    {
      "job": 84872047790,
      "time": 337,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8050987479"
    },
    {
      "job": 84873107784,
      "time": 212,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8051068974"
    },
    {
      "job": 84873107796,
      "time": 421,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8051146220"
    },
    {
      "job": 84873107828,
      "time": 332,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8051114393"
    },
    {
      "job": 84873107815,
      "time": 316,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8051107960"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432",
  "_status": "success",
  "_upstream": "https://github.com/dsjohnson/walk",
  "_commit": {
    "id": "393997abb41a927e786c554da328f5157c8ae745",
    "author": "Devin Johnson <devin.johnson@noaa.gov>",
    "committer": "Devin Johnson <devin.johnson@noaa.gov>",
    "message": "update get_Q\n",
    "time": 1783021847
  },
  "_maintainer": {
    "name": "Devin S. Johnson",
    "email": "devin.johnson@noaa.gov",
    "login": "dsjohnson",
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA",
    "uuid": 513489
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "expQ2",
      "role": "LinkingTo"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "terra",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "optimx",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "spdep",
      "role": "Imports"
    },
    {
      "package": "ctmm",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "rARPACK",
      "role": "Imports"
    }
  ],
  "_owner": "dsjohnson",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-35",
      "n": 1
    },
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 1
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-19",
      "n": 1
    },
    {
      "week": "2026-24",
      "n": 3
    },
    {
      "week": "2026-25",
      "n": 1
    },
    {
      "week": "2026-26",
      "n": 1
    },
    {
      "week": "2026-27",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "dsjohnson",
      "count": 56,
      "uuid": 513489
    },
    {
      "user": "james-thorson",
      "count": 3,
      "uuid": 7989837
    }
  ],
  "_userbio": {
    "uuid": 513489,
    "type": "user",
    "name": "Devin Johnson",
    "followers": 67,
    "description": "Mathematical Statistician for the Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/walk"
  },
  "_devurl": "https://github.com/dsjohnson/walk",
  "_searchresults": 1,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/walk.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "bc_raster",
    "ctmc_control",
    "ctmc_model",
    "ctmc_n2ll",
    "dm_q_m",
    "dm_q_r",
    "find_clip",
    "fit_ctmc",
    "gen_invLogit",
    "get_betas",
    "get_grad",
    "get_lim_ud",
    "get_Q",
    "make_walk_data",
    "predict_ctmc",
    "proc_telem",
    "raster_fill",
    "raster_z",
    "set_barrier_mask",
    "softPlus"
  ],
  "_help": [
    {
      "page": "arg_funs",
      "title": "Define specifics for model structure and fitting control",
      "topics": [
        "arg_funs",
        "ctmc_control",
        "ctmc_model"
      ]
    },
    {
      "page": "bc_raster",
      "title": "Bhattacharyya distance for 2 raster probability densities",
      "topics": [
        "bc_raster"
      ]
    },
    {
      "page": "ctmc_n2ll",
      "title": "Evaluate movement MMPP log-likelihood",
      "topics": [
        "ctmc_n2ll"
      ]
    },
    {
      "page": "dm_matrix",
      "title": "Create sparse representations of design matrices for movement and resight models",
      "topics": [
        "dm_matrix",
        "dm_q_m",
        "dm_q_r"
      ]
    },
    {
      "page": "find_clip",
      "title": "Find Clip Value",
      "topics": [
        "find_clip"
      ]
    },
    {
      "page": "fit_ctmc",
      "title": "Fit CTMC movement model to telemetry data",
      "topics": [
        "fit_ctmc"
      ]
    },
    {
      "page": "gen_invLogit",
      "title": "General inverse logit function",
      "topics": [
        "gen_invLogit"
      ]
    },
    {
      "page": "get_betas",
      "title": "Summarize beta parameter values",
      "topics": [
        "get_betas"
      ]
    },
    {
      "page": "get_grad",
      "title": "Find gradient field of a elevation raster",
      "topics": [
        "get_grad"
      ]
    },
    {
      "page": "get_lim_ud",
      "title": "Get the limiting utilization distribution of the CTMC movement process",
      "topics": [
        "get_lim_ud"
      ]
    },
    {
      "page": "get_Q",
      "title": "Get movement transition matrix from fitted moveMMP object",
      "topics": [
        "get_Q"
      ]
    },
    {
      "page": "make_walk_data",
      "title": "Produce design data for use in fitting MMPP movement models",
      "topics": [
        "make_walk_data"
      ]
    },
    {
      "page": "predict_ctmc",
      "title": "Predict Movement Path From Fitted CTMC Model",
      "topics": [
        "predict_ctmc"
      ]
    },
    {
      "page": "proc_telem",
      "title": "Convert 'ctmm' telemetry data object to a 'SpatRaster' stack from the 'terra' package.",
      "topics": [
        "proc_telem"
      ]
    },
    {
      "page": "raster_fill",
      "title": "Fill raster holes and NAs with local interpolation",
      "topics": [
        "raster_fill"
      ]
    },
    {
      "page": "raster_z",
      "title": "Z transform a raster",
      "topics": [
        "raster_z"
      ]
    },
    {
      "page": "set_barrier_mask",
      "title": "Denote cells where the animal cannot travel",
      "topics": [
        "set_barrier_mask"
      ]
    },
    {
      "page": "softPlus",
      "title": "Soft-plus function",
      "topics": [
        "softPlus"
      ]
    }
  ],
  "_readme": "https://github.com/dsjohnson/walk/raw/HEAD/README.md",
  "_rundeps": [
    "Bessel",
    "BH",
    "boot",
    "class",
    "classInt",
    "cli",
    "cpp11",
    "ctmm",
    "data.table",
    "DBI",
    "deldir",
    "DEoptimR",
    "digest",
    "dplyr",
    "e1071",
    "expm",
    "expQ2",
    "fasttime",
    "generics",
    "glue",
    "Gmedian",
    "gmp",
    "gsl",
    "KernSmooth",
    "lattice",
    "lifecycle",
    "magrittr",
    "manipulate",
    "MASS",
    "Matrix",
    "mvtnorm",
    "nloptr",
    "numDeriv",
    "optimx",
    "parsedate",
    "pbivnorm",
    "pillar",
    "pkgconfig",
    "pracma",
    "proxy",
    "purrr",
    "R6",
    "rARPACK",
    "raster",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "rlang",
    "Rmpfr",
    "robustbase",
    "RSpectra",
    "s2",
    "sf",
    "shape",
    "sp",
    "spData",
    "spdep",
    "statmod",
    "stringi",
    "stringr",
    "terra",
    "tibble",
    "tidyr",
    "tidyselect",
    "units",
    "utf8",
    "vctrs",
    "withr",
    "wk"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 2.7403626894942437,
  "_indexed": true,
  "_nocasepkg": "walk",
  "_universes": [
    "dsjohnson"
  ],
  "_previous": "0.0.0.940",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/bffe55dcc5ee50a8128857a27baeaab13fcd754771b1f37ac47f183e81adb75d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:54.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/c07b52fe66a447ffbc86858db32c2d40a18adb436d58019fcdddafb725955e2e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:56.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/9921f89c52921b2a805c4ec6358032eb67ecd3ef62ecc0614d1bd203875e0a98",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:49.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/9035ee0d3db42e3064c9f0a9e2ebccf65bf4b90b226453686d3034e92dd38d0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:38:53.000Z",
      "arch": "aarch64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/4e196a486d49ddab5557fa8fef48114cbef5b73e4ffdf5f51a51f226c33f4a53",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:28.000Z",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/b907cf57ebfcd607ca5e2d75ec628e1ae96ec594dc8926f40a410fb9ffeaea92",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:39:11.000Z",
      "arch": "aarch64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/a775a6723ed5fdfbd8b692d5983b0f202dfa9e0af0988c2497d22e7afd7f10bd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:39:57.000Z",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/12fdd9c67cd935f822792b83f240881315e03268ab4a0233819013878dc71b51",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:42.000Z",
      "arch": "emscripten",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/4bce7cf934a3fd6246f32f3a740383faa55fbcf30a6d49d62d453625c676b842",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:40:22.000Z",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/1199c4c8c59b8ae89c38a815045e295bcffc70857c2f5782c3dc41a504a64bae",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:39:35.000Z",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/c38f259ef78e20370644a82d7a2f905f7cabf2310ee386a01f73c0463fb138ea",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.0.941",
      "date": "2026-07-02T20:39:04.000Z",
      "arch": "x86_64",
      "commit": "393997abb41a927e786c554da328f5157c8ae745",
      "fileid": "https://r2.ropensci.org/8b7e2e1f99ae4a8dbe1b3dbd47f2063abaa0df955e466da55d6a9ca88c200cb7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/dsjohnson/actions/runs/28619658432"
    }
  ]
}