Package: crawlUtils 0.1.62

crawlUtils: Enhance And Integrate the {crawl} Package For Spatial Analysis Of Telemetry Output

Utility functions to augment the the {crawl} package and integrate it with the {sf} package for spatial analysis of telemetry model output. The additional function are targeted toward analysis of marine mammal telemetry, but can be used or easily modified for other situations.

Authors:Devin S. Johnson [aut, cre], Josh London [aut]

crawlUtils_0.1.62.tar.gz
crawlUtils_0.1.62.zip(r-4.7)crawlUtils_0.1.62.zip(r-4.6)crawlUtils_0.1.62.zip(r-4.5)
crawlUtils_0.1.62.tgz(r-4.6-any)crawlUtils_0.1.62.tgz(r-4.5-any)
crawlUtils_0.1.62.tar.gz(r-4.7-any)crawlUtils_0.1.62.tar.gz(r-4.6-any)
crawlUtils_0.1.62.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crawlUtils/json (API)

# Install 'crawlUtils' in R:
install.packages('crawlUtils', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsjohnson/crawlutils/issues

On CRAN:

Conda:

2.00 score 2 stars 1 scripts 31 exports 71 dependencies

Last updated from:87b78e7a13. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK270
source / vignettesOK269
linux-release-x86_64OK269
macos-release-arm64OK180
macos-oldrel-arm64OK171
windows-develOK212
windows-releaseOK216
windows-oldrelOK211
wasm-releaseOK158

Exports:%>%bw_silvercu_add_argos_colscu_add_boutscu_add_gapscu_argosDiag2Covcu_bout_detcu_bout_det_mbccu_bout_summarycu_crw_argoscu_crw_covfuncu_crw_covmatcu_crw_esscu_crw_predictcu_crw_samplecu_disp_ratecu_empirical_udcu_extract_obstcu_hudcu_join_interval_tblcu_location_ratecu_plot_dispcu_read_wc_dirscu_sf_kdecu_ud_contourhex_sizest_bbox_listst_expandst_not_withinst_to_360st_union_list

Dependencies:bitbit64classclassIntclicliprcodetoolscpp11crawlcrayonDBIdplyre1071farverforeachfuzzyjoingenericsgeosphereggplot2gluegtablehmsisobanditeratorsjanitorKernSmoothlabelinglatticelifecyclelubridatemagrittrMASSMatrixmclustmgcvmvtnormnlmepillarpkgconfigprettyunitsprogressproxypurrrR6RColorBrewerRcppRcppArmadilloreadrrlangs2S7scalessfsnakecasespstringdiststringistringrterratibbletidyrtidyselecttimechangetzdbunitsutf8vctrsviridisLitevroomwithrwk

Readme and manuals

Help Manual

Help pageTopics
Functions To Increase Usability Of The 'crawl' PackagecrawlUtils-package crawlUtils
Silverman default bandwidth calculationbw_silver
Add columns for modeling FastGPS and ARGOS error structure in the same telemetry deploymentcu_add_argos_cols
Add migration detection results to original location datacu_add_bouts
Label telemetry bout segmentscu_add_gaps
Transform Argos diagnostic data to covariance matrix formcu_argosDiag2Cov
Movement bout detectioncu_bout_det
Movement bout detectioncu_bout_det_mbc
Create a Table of Start and End Times for each Bout in a telemetry data setcu_bout_summary
Batch Fitting CTCRW Models for Argos (and FastGPS) Datacu_crw_argos
Create covariance function for a fitted CRW model objectcu_crw_covfun
Calculate correlation matrix for a set of times from a CRW covariance functioncu_crw_covmat
Calculate Effective Sample Size for a Set of CRW locationscu_crw_ess
Batch CRW Prediction for Multiple Animalscu_crw_predict
Batch CRW Posterior Path Simulation For Multiple Animalscu_crw_sample
Movement bout detectioncu_disp_rate
Calculate an empirical utilization distributioncu_empirical_ud
Extract predicted locatiins closest in time to observed locations.cu_extract_obst
Highest utilization densitycu_hud
Join crawl prediction or simulation output with a table based on a time intervalcu_join_interval_tbl
Location rate statisticscu_location_rate
Plot migration detection resultscu_plot_disp
Read individual telemetry data from Wildlife Computers portal directoriescu_read_wc_dirs
Spatial kernel density estimatecu_sf_kde
Approximate contours for a UDcu_ud_contour
Calculate cellsize value for hexagon gridhex_size
'sf::st_bbox' for a list of 'sf' or 'sfc' objects.st_bbox_list
Expand Spatial Bounding Boxst_expand
Predicate function for st_filterst_not_within
Convert longitude/latitude coordinates from -180/180 to 0/360st_to_360
'sf::st_union' for a list of 'sf' or 'sfc' objects.st_union_list