Package: marked 1.3.0
marked: Mark-Recapture Analysis for Survival and Abundance Estimation
Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.
Authors:
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marked/json (API)
NEWS
# Install 'marked' in R: |
install.packages('marked', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jlaake/marked/issues
- dipper - Dipper capture-recapture data
- mstrata - Multistrata example data
- ps - Mulstistate Live-Dead Paradise Shelduck Data
- sealions - Multivariate State example data
- skagit - An example of the Mulstistrata (multi-state) model in which states are routes taken by migrating fish.
- tagloss - Tag loss example
Last updated 3 months agofrom:1e9a43e33c (on devel). Checks:ERROR: 1 OK: 8. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Nov 03 2024 |
R-4.5-win-x86_64 | OK | Nov 03 2024 |
R-4.5-linux-x86_64 | OK | Nov 03 2024 |
R-4.4-win-x86_64 | OK | Nov 03 2024 |
R-4.4-mac-x86_64 | OK | Nov 03 2024 |
R-4.4-mac-aarch64 | OK | Nov 03 2024 |
R-4.3-win-x86_64 | OK | Nov 03 2024 |
R-4.3-mac-x86_64 | OK | Nov 03 2024 |
R-4.3-mac-aarch64 | OK | Nov 03 2024 |
Exports:accumulate_databackward_probcjs_deltacjs_dmatcjs_gammacjs.hessiancollapseCHcompute_matricescompute_realcreate.model.listcrmcrm.wrappercrmlist_fromfilesdmat_hsmm2hmmfix.parametersfunction.wrapperfx.aicfx.par.countglobal_decodehmmDemohsmm2hmminitiate_pijs.hessianload.modellocal_decodeloglikelihoodmake.design.datamcmc_modemerge_design.covariatesmodel.tablems_dmatms_gammams2_gammamscjsmscjs_tmbmsld_tmbmvms_design_datamvms_dmatmvmscjsmvmscjs_deltamvmscjs_tmbnaive.survivalomegap.boxplotp.meanPhi.boxplotPhi.meanprobitCJSprocess.chprocess.dataR_HMMLikelihoodrerun_crmresight.matrixset_mvmssetup_admbsetup_tmbsetup.modelsetup.parameterssimHMMsmsld_tmbsplitCHums_dmatums2_dmat
Dependencies:base64encbookdownbootbslibcachemclicodacolorspacecpp11data.tabledigestevaluateexpmfarverfastmapfontawesomefsgluehighrhtmltoolsjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclelme4magrittrMASSMatrixmemoisemimeminqamunsellnlmenloptrnumDerivoptimxpracmaR2admbR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrstudioapisassscalesstringistringrsvglitesystemfontstinytexTMBtruncnormvctrsviridisLitexfunxml2yaml
marked Package Vignette
Rendered frommarkedVignette.Rmd
usingknitr::rmarkdown
on Nov 03 2024.Last update: 2019-12-09
Started: 2019-11-18