Package: marked
Version: 1.3.1
Date: 2025-04-02
Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Author: Jeff Laake <jefflaake@gmail.com>, Devin Johnson
        <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>,
        example for simHMM from Jay Rotella
Maintainer: Jeff Laake <jefflaake@gmail.com>
Description: Functions for fitting various models to capture-recapture
        data including mixed-effects Cormack-Jolly-Seber(CJS) and
        multistate models and the multi-variate state model structure
        for survival estimation and POPAN structured Jolly-Seber models
        for abundance estimation. There are also Hidden Markov model
        (HMM) implementations of CJS and multistate models with and
        without state uncertainty and a simulation capability for HMM
        models.
Depends: R (>= 3.5.0), lme4, methods, parallel
Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix,
        numDeriv, expm, Rcpp (>= 0.9.13), TMB, optimx (>= 2013.8.6),
        data.table, knitr, kableExtra, bookdown
Suggests: ggplot2
LinkingTo: Rcpp
SystemRequirements: ADMB version 11 <http://admb-project.org/> for
        use.admb=TRUE; see readme.txt
LazyLoad: yes
VignetteBuilder: knitr
License: GPL (>=2)
RoxygenNote: 7.3.1
Encoding: UTF-8
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev
        libuv1-dev libxml2-dev
Repository: https://dsjohnson.r-universe.dev
Date/Publication: 2026-04-12 22:45:58 UTC
RemoteUrl: https://github.com/jlaake/marked
RemoteRef: devel
RemoteSha: fe6e80628d940824a6a0c492c40bc603b5200c5d
RemoteSubdir: marked
NeedsCompilation: yes
Packaged: 2026-06-11 07:09:04 UTC; root