Package: moveMMPP 0.0.0.9034
moveMMPP: Fit Continuous-Time Markov Modulated Poisson Process Movement Models to Animal Resight Data
Using animal resight data, the package functions allow the user to estimate movement rates and resource selection using a continuous-time Markov chain movement model.
Authors:
moveMMPP_0.0.0.9034.tar.gz
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moveMMPP_0.0.0.9034.tgz(r-4.6-x86_64)moveMMPP_0.0.0.9034.tgz(r-4.6-arm64)moveMMPP_0.0.0.9034.tgz(r-4.5-x86_64)moveMMPP_0.0.0.9034.tgz(r-4.5-arm64)
moveMMPP_0.0.0.9034.tar.gz(r-4.7-arm64)moveMMPP_0.0.0.9034.tar.gz(r-4.7-x86_64)moveMMPP_0.0.0.9034.tar.gz(r-4.6-arm64)moveMMPP_0.0.0.9034.tar.gz(r-4.6-x86_64)
moveMMPP_0.0.0.9034.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
moveMMPP/json (API)
| # Install 'moveMMPP' in R: |
| install.packages('moveMMPP', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dsjohnson/movemmpp/issues
Last updated from:54de1bc2be. Checks:10 NOTE, 2 OK, 3 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 229 | ||
| linux-devel-x86_64 | NOTE | 248 | ||
| source / vignettes | OK | 321 | ||
| linux-release-arm64 | NOTE | 218 | ||
| linux-release-x86_64 | NOTE | 227 | ||
| macos-release-arm64 | NOTE | 198 | ||
| macos-release-x86_64 | NOTE | 323 | ||
| macos-oldrel-arm64 | NOTE | 168 | ||
| macos-oldrel-x86_64 | NOTE | 372 | ||
| windows-devel-arm64 | NOTE | 366 | ||
| windows-devel-x86_64 | WARNING | 264 | ||
| windows-release-arm64 | NOTE | 323 | ||
| windows-release-x86_64 | WARNING | 238 | ||
| windows-oldrel-x86_64 | WARNING | 187 | ||
| wasm-release | OK | 181 |
Exports:dm_lambdadm_q_mdm_q_rfit_mmppget_betasget_lim_udget_Qmake_design_datamake_sim_dmmake_sim_parmmpp_controlmmpp_llmmpp_modelprocess_datasim_mmpp
Dependencies:BHbootclassclassIntclicpp11DBIdeldirdplyre1071expQ2genericsglueKernSmoothlatticelifecyclelubridatemagrittrMatrixnloptrnumDerivoptimxpillarpkgconfigpracmaproxypurrrR6rARPACKRcppRcppArmadilloRcppEigenrlangRSpectras2sfspspDataspdepstringistringrterratibbletidyrtidyselecttimechangeunitsutf8vctrswithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Define specifics for model structure and fitting control | arg_funs mmpp_control mmpp_model |
| Create sparse representations of design matrices for movement and resight models | dm_lambda dm_matrix dm_q_m dm_q_r |
| Fit MMPP movement model to resight data | fit_mmpp |
| Summarize beta parameter values | get_betas |
| Get the limiting utilization distribution of the CTMC movement process | get_lim_ud |
| Get movement transition matrix from fitted moveMMP object | get_Q |
| Produce design data for use in fitting MMPP movement models | make_design_data |
| Create model data necessary for MMPP simulation | make_sim_dm |
| Create Q and L matrices for MMPP simulation | make_sim_par |
| Evaluate movement MMPP log-likelihood | mmpp_ll |
| Process MMPP movement detection data for model fitting | process_data |
| Simulate a Markov Modulated Poisson Process | sim_mmpp |