Package: moveMMPP 0.0.0.9022

moveMMPP: Fit Continuous-Time Markov Modulated Poisson Process Movement Models to Animal Resight Data

Using animal resight data, the package functions allow the user to estimate movement rates and resource selection using a continuous-time Markov chain movement model.

Authors:Devin Johnson [aut, cre]

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moveMMPP.pdf |moveMMPP.html✨
moveMMPP/json (API)

# Install 'moveMMPP' in R:

install.packages('moveMMPP', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsjohnson/movemmpp/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

On CRAN:

15 exports 0.82 score 53 dependencies

Last updated 5 months agofrom:50e71282da. Checks:OK: 3 NOTE: 3 WARNING: 3. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 06 2024
R-4.5-win-x86_64	WARNING	Sep 06 2024
R-4.5-linux-x86_64	NOTE	Sep 06 2024
R-4.4-win-x86_64	WARNING	Sep 06 2024
R-4.4-mac-x86_64	NOTE	Sep 06 2024
R-4.4-mac-aarch64	NOTE	Sep 06 2024
R-4.3-win-x86_64	WARNING	Sep 06 2024
R-4.3-mac-x86_64	OK	Sep 06 2024
R-4.3-mac-aarch64	OK	Sep 06 2024

Exports:dm_lambda dm_q_m dm_q_r fit_mmpp get_betas get_lim_ud get_Q make_design_data make_sim_dm make_sim_par mmpp_control mmpp_ll mmpp_model process_data sim_mmpp

Dependencies:BH boot class classInt cli cpp11 DBI deldir dplyr e1071 expQ2 fansi generics glue KernSmooth lattice lifecycle lubridate magrittr MASS Matrix nloptr numDeriv optimx pillar pkgconfig pracma proxy purrr R6 rARPACK Rcpp RcppArmadillo RcppEigen rlang RSpectra s2 sf sp spData spdep stringi stringr terra tibble tidyr tidyselect timechange units utf8 vctrs withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Define specifics for model structure and fitting control	arg_funs mmpp_control mmpp_model
Create sparse representations of design matrices for movement and resight models	dm_lambda dm_matrix dm_q_m dm_q_r
Fit MMPP movement model to resight data	fit_mmpp
Summarize beta parameter values	get_betas
Get the limiting utilization distribution of the CTMC movement process	get_lim_ud
Get movement transition matrix from fitted moveMMP object	get_Q
Produce design data for use in fitting MMPP movement models	make_design_data
Create model data necessary for MMPP simulation	make_sim_dm
Create Q and L matrices for MMPP simulation	make_sim_par
Evaluate movement MMPP log-likelihood	mmpp_ll
Process MMPP movement detection data for model fitting	process_data
Simulate a Markov Modulated Poisson Process	sim_mmpp