Package: nimbleJSextras 0.1.9002

nimbleJSextras: Aadditional Functions and Distributions For Bayesian Inference Of Jolly-Seber Models For The NIMBLE Package

This package provides functions and simulation capability for modeling and testing code when analyzing capture-recapture data using Jolly-Seber type models.

Authors:Devin Johnson [aut, cre]

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
nimbleJSextras/json (API)

# Install 'nimbleJSextras' in R:

install.packages('nimbleJSextras', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsjohnson/nimblejsextras/issues

On CRAN:

2.88 score 23 exports 17 dependencies

Last updated from:840b1c7afd. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	157
source / vignettes	OK	151
linux-release	OK	131
macos-release	OK	124
macos-oldrel	OK	81
windows-devel	OK	90
windows-release	OK	74
windows-oldrel	OK	86
wasm-release	OK	107

Exports:collapse_ch dhmm_binom dhmm_pois dJS_binom dJS_ms dJS_pois pstar_binom pstar_ms pstar_pois rhmm_binom rhmm_pois rJS_binom rJS_ms rJS_pois sample_det_binom sample_det_ms sample_det_pois sample_undet_binom sample_undet_ms sample_undet_pois sim_js_list simulate_js simulate_multistate_js

Dependencies:cli coda cpp11 glue igraph lattice lifecycle magrittr Matrix nimble nimbleEcology numDeriv pkgconfig pracma R6 rlang vctrs

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Collapse all capture histories to only unique histories	collapse_ch
Hidden Markov Model distribution for binomial and Poisson capture histories	dhmm_binom dhmm_js dhmm_pois rhmm_binom rhmm_pois
Jolly-Seber distributions For nimble models	dJS dJS_binom dJS_ms dJS_pois pstar_binom pstar_ms pstar_pois rJS_binom rJS_ms rJS_pois
Sample states for undetected (not captured) individuals	sample_det sample_det_binom sample_det_ms sample_det_pois
Sample states for undetected (not captured) individuals	sample_undet sample_undet_binom sample_undet_ms sample_undet_pois
Simulation output object	sim_js_list
Simulate Traditional Jolly-Seber Capture-Recapture Data	simulate_js
Simulate Multistate Jolly-Seber Capture-Recapture Data	simulate_multistate_js