Package: ctmmUtils 0.0.0.9107

ctmmUtils: Auxillary functions for using the {ctmm} package efficiently

Utility functions to augment the the {ctmm} package. The additional function are targeted toward analysis of marine mammal telemetry, but can be used or easily modified for other situations.

Authors:Devin S. Johnson [aut, cre], Josh London [aut]

ctmmUtils_0.0.0.9107.tar.gz
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ctmmUtils.pdf |ctmmUtils.html✨
ctmmUtils/json (API)

# Install 'ctmmUtils' in R:

install.packages('ctmmUtils', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsjohnson/ctmmutils/issues

On CRAN:

2.40 score 18 exports 130 dependencies

Last updated 2 months agofrom:7086fe389e. Checks:7 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 04 2025
R-4.5-win	OK	Jan 04 2025
R-4.5-linux	OK	Jan 04 2025
R-4.4-win	OK	Jan 04 2025
R-4.4-mac	OK	Jan 04 2025
R-4.3-win	OK	Jan 04 2025
R-4.3-mac	OK	Jan 04 2025

Exports:akde_barrier as_telem ctmm_select_parallel hex_size migration_det ouf_corfun ouf_covmat ouf_ess ouf_ess_parallel plot_disp read_wc_dirs set_default_ellipses st_bbox_list st_expand st_not_within st_to_360 st_union_list ud_area_table

Dependencies:askpass base64enc Bessel bit bit64 bslib cachem class classInt cli clipr codetools colorspace cpp11 crayon crosstalk ctmm curl data.table DBI DEoptimR digest doFuture dplyr e1071 evaluate expm fansi farver fastmap fasttime fontawesome foreach fs future future.apply fuzzyjoin generics geosphere ggplot2 globals glue Gmedian gmp gsl gtable highr hms htmltools htmlwidgets httr isoband iterators janitor jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle listenv lubridate magrittr manipulate MASS Matrix memoise mgcv mime munsell nlme numDeriv openssl parallelly parsedate pbivnorm pillar pkgconfig plotly pracma prettyunits progress progressr promises proxy purrr R6 rappdirs raster RColorBrewer Rcpp RcppArmadillo RcppEigen readr rlang rmarkdown Rmpfr robustbase RSpectra s2 sass scales sf shape snakecase sp statmod stringdist stringi stringr sys terra tibble tidyr tidyselect timechange tinytex tzdb units utf8 vctrs viridisLite vroom withr wk xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Functions To Increase Usability Of The 'ctmm' Package	ctmmUtils-package ctmmUtils
Safe method for calculating an AKDE with a barrier	akde_barrier
Convert Wildlife Computers data imported with `read_wc_dirs` to a `telemetry` object from the `ctmm` package.	as_telem
Parallel fitting of ctmm OUF family models	ctmm_select_parallel
Calculate cellsize value for hexagon grid	hex_size
Migration detection	migration_det
Create covariance function for a fitted OU or OUF ctmm model object	ouf_corfun
Calculate correlation matrix for a set of times from a `ctmm` covariance function	ouf_covmat
Calculate Effective Sample Size for a Set of OUF locations	ouf_ess
Parallel ESS calculation of ctmm OUF family models	ouf_ess_parallel
Plot migration detection results	plot_disp
Read individual telemetry data from Wildlife Computers portal directories	read_wc_dirs
Set Default Values for MIssing ARGOS Diagnostic Data	set_default_ellipses
'sf::st_bbox' for a list of 'sf' or 'sfc' objects.	st_bbox_list
Expand Spatial Bounding Box	st_expand
Predicate function for st_filter	st_not_within
Convert longitude/latitude coordinates from -180/180 to 0/360	st_to_360
'sf::st_union' for a list of 'sf' or 'sfc' objects.	st_union_list
Get UD Area Table	ud_area_table