Package: ctmmUtils 0.0.0.9100

ctmmUtils: Auxillary functions for using the {ctmm} package efficiently

Utility functions to augment the the {ctmm} package. The additional function are targeted toward analysis of marine mammal telemetry, but can be used or easily modified for other situations.

Authors:Devin S. Johnson [aut, cre], Josh London [aut]

ctmmUtils_0.0.0.9100.tar.gz
ctmmUtils_0.0.0.9100.zip(r-4.5)ctmmUtils_0.0.0.9100.zip(r-4.4)ctmmUtils_0.0.0.9100.zip(r-4.3)
ctmmUtils_0.0.0.9100.tgz(r-4.4-any)ctmmUtils_0.0.0.9100.tgz(r-4.3-any)
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ctmmUtils.pdf |ctmmUtils.html✨
ctmmUtils/json (API)

# Install 'ctmmUtils' in R:

install.packages('ctmmUtils', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsjohnson/ctmmutils/issues

On CRAN:

2.18 score 10 exports 151 dependencies

Last updated 25 days agofrom:f51dd779ce. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 29 2024
R-4.5-win	OK	Oct 29 2024
R-4.5-linux	OK	Oct 29 2024
R-4.4-win	OK	Oct 29 2024
R-4.4-mac	OK	Oct 29 2024
R-4.3-win	OK	Oct 29 2024
R-4.3-mac	OK	Oct 29 2024

Exports:as_telem ctmm_select_parallel migration_det ouf_corfun ouf_covmat ouf_ess ouf_ess_parallel plot_disp read_wc_dirs telem_sda

Dependencies:abind askpass base64enc Bessel bit bit64 bslib cachem class classInt cli clipr codetools colorspace cpp11 crayon crosstalk crsmeta ctmm curl data.table DBI deldir DEoptimR digest doFuture dplyr e1071 evaluate expm fansi farver fastmap fasttime fontawesome foreach fs future future.apply fuzzyjoin generics geodist geosphere ggplot2 globals glue Gmedian gmp goftest gridExtra gsl gtable highr hms htmltools htmlwidgets httr isoband iterators janitor jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval lifecycle listenv lubridate magrittr manipulate MASS Matrix memoise mgcv mime munsell nlme numDeriv openssl parallelly parsedate pbivnorm pillar pkgconfig plotly polyclip pracma prettyunits progress progressr PROJ proj4 promises proxy purrr R6 rappdirs raster RColorBrewer Rcpp RcppArmadillo RcppEigen readr reproj rlang rmarkdown Rmpfr robustbase RSpectra s2 sass scales sf shape snakecase sp spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.univar spatstat.utils statmod stringdist stringi stringr sys tensor terra tibble tidyr tidyselect timechange tinytex traipse trip tzdb units utf8 vctrs viridis viridisLite vroom withr wk xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Functions To Increase Usability Of The 'ctmm' Package	ctmmUtils-package ctmmUtils
Convert Wildlife Computers data imported with `read_wc_dirs` to a `telemetry` object from the `ctmm` package.	as_telem
Parallel fitting of ctmm OUF family models	ctmm_select_parallel
Migration detection	migration_det
Create covariance function for a fitted OU or OUF ctmm model object	ouf_corfun
Calculate correlation matrix for a set of times from a `ctmm` covariance function	ouf_covmat
Calculate Effective Sample Size for a Set of OUF locations	ouf_ess
Parallel ESS calculation of ctmm OUF family models	ouf_ess_parallel
Plot migration detection results	plot_disp
Read individual telemetry data from Wildlife Computers portal directories	read_wc_dirs
Filter track for speed, distance and angle.	telem_sda