Package: walk 0.0.0.920
walk: Model Animal Movement With Continuous-Time Markov Chains
Model animal movement using continuous-time Markov chain models.
Authors:
walk_0.0.0.920.tar.gz
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walk.pdf |walk.html✨
walk/json (API)
# Install 'walk' in R: |
install.packages('walk', repos = c('https://dsjohnson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dsjohnson/walk/issues
Last updated 6 months agofrom:5745638f84. Checks:OK: 1 WARNING: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 05 2024 |
R-4.5-win-x86_64 | WARNING | Nov 05 2024 |
R-4.5-linux-x86_64 | WARNING | Nov 05 2024 |
R-4.4-win-x86_64 | WARNING | Nov 05 2024 |
R-4.4-mac-x86_64 | WARNING | Nov 05 2024 |
R-4.4-mac-aarch64 | WARNING | Nov 05 2024 |
R-4.3-win-x86_64 | WARNING | Nov 05 2024 |
R-4.3-mac-x86_64 | WARNING | Nov 05 2024 |
R-4.3-mac-aarch64 | WARNING | Nov 05 2024 |
Exports:ctmc_controlctmc_modelctmc_n2lldm_q_mdm_q_rfit_ctmcgen_invLogitget_betasget_lim_udget_Qmake_walk_datapredict_ctmcproc_telemset_barrier_masksoftPlus
Dependencies:BesselBHbootclassclassIntclicpp11ctmmdata.tableDBIdeldirDEoptimRdigestdplyre1071expmexpQ2fansifasttimegenericsglueGmediangmpgslKernSmoothlatticelifecyclemagrittrmanipulateMASSMatrixmvtnormnloptrnumDerivoptimxparsedatepbivnormpillarpkgconfigpracmaproxypurrrR6rARPACKrasterRcppRcppArmadilloRcppEigenrlangRmpfrrobustbaseRSpectras2sfshapespspDataspdepstatmodstringistringrterratibbletidyrtidyselectTMBunitsutf8vctrswithrwk
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Define specifics for model structure and fitting control | arg_funs ctmc_control ctmc_model |
Evaluate movement MMPP log-likelihood | ctmc_n2ll |
Create sparse representations of design matrices for movement and resight models | dm_matrix dm_q_m dm_q_r |
Fit CTMC movement model to telemetry data | fit_ctmc |
General inverse logit function | gen_invLogit |
Summarize beta parameter values | get_betas |
Get the limiting utilization distribution of the CTMC movement process | get_lim_ud |
Get movement transition matrix from fitted moveMMP object | get_Q |
Produce design data for use in fitting MMPP movement models | make_walk_data |
Predict Movement Path From Fitted CTMC Model | predict_ctmc |
Convert ctmm telemetry data object to a terra 'SpatRaster' stack | proc_telem |
Denote cells where the animal cannot travel | set_barrier_mask |
Soft-plus function | softPlus |